Talks

Applied Bioinformatics: A 2-Day Hands-On Workshop

Two days, eight modules, nine runnable Jupyter notebooks — CLI/bash automation, FASTA/FASTQ/SAM/VCF parsing, QC and trimming, alignment, GATK variant calling, RNA-seq with DESeq2, and visualization. All notebooks embedded inline; pipelines, environment files, and a synthetic chr22 capstone dataset are downloadable.

KAIROS: Adaptive Trial Design via Per-Gene RNA Pol II Speed Profiles

Presents the KAIROS framework for adaptive trial design using per-gene RNA Pol II speed profiles, sequential Bayesian boundaries, and operating-characteristic analysis.

Adaptive Design Speed-Profile Viewer

Per-gene adaptive design viewer -- methods, server architecture, speed-profile readouts, and the statistical story behind the tool.

Entropic Source Classification in Hardware RNGs

Classification system for entropic sources in random number generators, including NIST Statistical Test Suite validation and hardware TRNG designs.