# Tier 1 — notebooks-only Python environment.
#
# This is all you need to RUN THE WORKSHOP NOTEBOOKS (Modules 1-8). The notebooks
# load pre-computed tool outputs and plot them, so the heavy bioinformatics CLI
# tools are NOT required just to follow along.
#
#   python -m venv .venv && source .venv/bin/activate
#   pip install -r environment/requirements.txt
#   jupyter lab          # launch from the materials root; open day1/module1_.../01_*.ipynb
#
# To ALSO run the real pipeline scripts (fastp/samtools/DESeq2/...), use the full
# conda environment instead — see conda_env.yml / setup.sh / INSTALL.md (Tier 2).
#
# Versions kept in sync with the pip: block of conda_env.yml.
biopython==1.83
pandas==2.2.2
numpy==1.26.4
matplotlib==3.9.0
seaborn==0.13.2
scipy==1.13.1
scikit-learn==1.4.2
pysam==0.22.1
pyvcf3==1.0.3
notebook==7.2.1
jupyterlab==4.2.3
ipywidgets==8.1.3
tqdm==4.66.4